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1

Use of the T-RFLP technique to assess spatial and temporal changes in the bacterial community structure within an agricultural soil planted with transgenic and non-transgenic potato plants

Thomas Lukow, Peter F Dunfield, Werner Liesack

Journal:

FEMS Microbiology Ecology

Year:

2000

Language:

english

File:

PDF, 222 KB

english, 2000

2

Activity and community structure of methane-oxidising bacteria in a wet meadow soil

Hans-Peter Horz, Akhilesh S. Raghubanshi, Jürgen Heyer, Claudia Kammann, Ralf Conrad, Peter F. Dunfield

Journal:

FEMS Microbiology Ecology

Year:

2002

Language:

english

File:

PDF, 430 KB

english, 2002

3

Methanotrophic bacteria in boreal forest soil after fire

Krista Jaatinen, Claudia Knief, Peter F. Dunfield, Kim Yrjälä, Hannu Fritze

Journal:

FEMS Microbiology Ecology

Year:

2004

Language:

english

File:

PDF, 343 KB

english, 2004

4

Abundance and activity of uncultured methanotrophic bacteria involved in the consumption of atmospheric methane in two forest soils

Steffen Kolb, Claudia Knief, Peter F. Dunfield, Ralf Conrad

Journal:

Environmental Microbiology

Year:

2005

Language:

english

File:

PDF, 188 KB

english, 2005

5

Isolation of novel bacteria, including a candidate division, from geothermal soils in New Zealand

Matthew B. Stott, Michelle A. Crowe, Bruce W. Mountain, Angela V. Smirnova, Shaobin Hou, Maqsudul Alam, Peter F. Dunfield

Journal:

Environmental Microbiology

Year:

2008

Language:

english

File:

PDF, 860 KB

english, 2008

6

Use of the T-RFLP technique to assess spatial and temporal changes in the bacterial community structure within an agricultural soil planted with transgenic and non-transgenic potato plants

Thomas Lukow, Peter F Dunfield, Werner Liesack

Journal:

FEMS Microbiology Ecology

Year:

2000

Language:

english

File:

PDF, 219 KB

english, 2000

7

Activity and community structure of methane-oxidising bacteria in a wet meadow soil

Hans-Peter Horz, Akhilesh S. Raghubanshi, Jürgen Heyer, Claudia Kammann, Ralf Conrad, Peter F. Dunfield

Journal:

FEMS Microbiology Ecology

Year:

2002

Language:

english

File:

PDF, 424 KB

english, 2002

8

Archaeal community structures in rice soils from different geographical regions before and after initiation of methane production

Balasubramanian Ramakrishnan, Tillmann Lueders, Peter F Dunfield, Ralf Conrad, Michael W Friedrich

Journal:

FEMS Microbiology Ecology

Year:

2001

Language:

english

File:

PDF, 531 KB

english, 2001

9

The active methanotrophic community in hydromorphic soils changes in response to changing methane concentration

Claudia Knief, Steffen Kolb, Paul L. E. Bodelier, André Lipski, Peter F. Dunfield

Journal:

Environmental Microbiology

Year:

2006

Language:

english

File:

PDF, 358 KB

english, 2006

10

Archaeal community structures in rice soils from different geographical regions before and after initiation of methane production

Balasubramanian Ramakrishnan, Tillmann Lueders, Peter F. Dunfield, Ralf Conrad, Michael W. Friedrich

Journal:

FEMS Microbiology Ecology

Year:

2001

Language:

english

File:

PDF, 527 KB

english, 2001

11

Isolation of a Methylocystis strain containing a novel pmoA-like gene

Peter F. Dunfield, Merlin Tchawa Yimga, Svetlana N. Dedysh, Ursula Berger, Werner Liesack, Jürgen Heyer

Journal:

FEMS Microbiology Ecology

Year:

2002

Language:

english

File:

PDF, 466 KB

english, 2002

12

Roundup Ready® soybean gene concentrations in field soil aggregate size classes

David J. Levy-Booth, Robert H. Gulden, Rachel G. Campbell, Jeff R. Powell, John N. Klironomos, K. Peter Pauls, Clarence J. Swanton, Jack T. Trevors, Kari E. Dunfield

Journal:

FEMS Microbiology Letters

Year:

2009

Language:

english

File:

PDF, 83 KB

english, 2009

13

Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia

Dunfield, Peter F., Yuryev, Anton, Senin, Pavel, Smirnova, Angela V., Stott, Matthew B., Hou, Shaobin, Ly, Binh, Saw, Jimmy H., Zhou, Zhemin, Ren, Yan

Journal:

Year:

2007

Language:

english

File:

PDF, 411 KB

english, 2007

14

Separating the effect of crop from herbicide on soil microbial communities in glyphosate-resistant corn

Miranda M. Hart, Jeff R. Powell, Robert H. Gulden, Kari E. Dunfield, K. Peter Pauls, Clarence J. Swanton, John N. Klironomos, Pedro M. Antunes, Alexander M. Koch, Jack T. Trevors

Journal:

Year:

2009

Language:

english

File:

PDF, 375 KB

english, 2009

15

Effects of genetically modified, herbicide-tolerant crops and their management on soil food web properties and crop litter decomposition

Jeff R. Powell, David J. Levy-Booth, Robert H. Gulden, Wendy L. Asbil, Rachel G. Campbell, Kari E. Dunfield, Allan S. Hamill, Miranda M. Hart, Sylvain Lerat, Robert E. Nurse, K. Peter Pauls, Peter H.

Journal:

Journal of Applied Ecology

Year:

2009

Language:

english

File:

PDF, 528 KB

english, 2009

16

Detection of transgeniccp4 epspsgenes in the soil food web

Miranda M. Hart, Jeff R. Powell, Robert H. Gulden, David J. Levy-Booth, Kari E. Dunfield, K. Peter Pauls, Clarence J. Swanton, John N. Klironomos, Jack T. Trevors

Journal:

Agronomy for Sustainable Development

Year:

2009

Language:

english

File:

PDF, 127 KB

english, 2009

17

Methylocella: a gourmand among methanotrophs

Dunfield, Peter F., Dedysh, Svetlana N.

Journal:

Trends in Microbiology

Year:

2014

Language:

english

File:

PDF, 204 KB

english, 2014

18

Stable-Isotope Probing Identifies Uncultured Planctomycetes as Primary Degraders of a Complex Heteropolysaccharide in Soil

Wang, Xiaoqing, Sharp, Christine E., Jones, Gareth M., Grasby, Stephen E., Brady, Allyson L., Dunfield, Peter F., Nojiri, H.

Journal:

Applied and Environmental Microbiology

Year:

2015

Language:

english

File:

PDF, 1.08 MB

english, 2015

19

Effects of Genetically Modified, Herbicide-Tolerant Crops and Their Management on Soil Food Web Properties and Crop Litter Decomposition

Jeff R. Powell, David J. Levy-Booth, Robert H. Gulden, Wendy L. Asbil, Rachel G. Campbell, Kari E. Dunfield, Allan S. Hamill, Miranda M. Hart, Sylvain Lerat, Robert E. Nurse, K. Peter Pauls, Peter H.

Journal:

Journal of Applied Ecology

Year:

2009

Language:

english

File:

PDF, 1.80 MB

english, 2009

20

Temporal dynamics of plant-soil feedback and root-associated fungal communities over 100 years of invasion by a non-native plant

Day, Nicola J., Dunfield, Kari E., Antunes, Pedro M., Thrall, Peter

Journal:

Journal of Ecology

Year:

2015

Language:

english

File:

PDF, 754 KB

english, 2015

21

Isolation of a Methylocystis strain containing a novel pmoA-like gene

Peter F. Dunfield, Merlin Tchawa Yimga, Svetlana N. Dedysh, Ursula Berger, Werner Liesack, Jürgen Heyer

Journal:

FEMS Microbiology Ecology

Year:

2002

Language:

english

File:

PDF, 470 KB

english, 2002

22

Differential detection of type II methanotrophic bacteria in acidic peatlands using newly developed 16S rRNA-targeted fluorescent oligonucleotide probes

Svetlana N Dedysh, Peter F Dunfield, Manigee Derakshani, Stephan Stubner, Jürgen Heyer, Werner Liesack

Journal:

FEMS Microbiology Ecology

Year:

2003

Language:

english

File:

PDF, 376 KB

english, 2003

23

Organic matter, heterotrophic activity, and NO· consumption in soils

Peter F. Dunfield, Roger Knowles

Journal:

Global Change Biology

Year:

1998

Language:

english

File:

PDF, 324 KB

english, 1998

24

Effect of nitrogen fertilizers and moisture content on CH4and N2O fluxes in a humisol: Measurements in the field and intact soil cores

Peter F. Dunfield, Edward Topp, Christian Archambault, Roger Knowles

Journal:

Biogeochemistry

Year:

1995

Language:

english

File:

PDF, 1.12 MB

english, 1995

25

A novelpmoAlineage represented by the acidophilic methanotrophic bacteriumMethylocapsa acidophilaB2

Svetlana N. Dedysh, Hans-Peter Horz, Peter F. Dunfield, Werner Liesack

Journal:

Archives of Microbiology

Year:

2001

Language:

english

File:

PDF, 117 KB

english, 2001

26

Erratum to: A novelpmoAlineage represented by the acidophilic methanotrophic bacteriumMethylocapsa acidophilaB2

Svetlana N. Dedysh, Hans-Peter Horz, Peter F. Dunfield, Werner Liesack

Journal:

Archives of Microbiology

Year:

2002

File:

PDF, 9 KB

2002

27

Regulation of methane oxidation in the facultative methanotroph Methylocella silvestris BL2

Andreas R. Theisen, M. Hanif Ali, Stefan Radajewski, Marc G. Dumont, Peter F. Dunfield, Ian R. McDonald, Svetlana N. Dedysh, Carlos B. Miguez, J. Colin Murrell

Journal:

Molecular Microbiology

Year:

2005

Language:

english

File:

PDF, 240 KB

english, 2005

28

Response and adaptation of different methanotrophic bacteria to low methane mixing ratios

Claudia Knief, Peter F. Dunfield

Journal:

Environmental Microbiology

Year:

2005

Language:

english

File:

PDF, 347 KB

english, 2005

29

Differential detection of type II methanotrophic bacteria in acidic peatlands using newly developed 16S rRNA-targeted fluorescent oligonucleotide probes

Svetlana N Dedysh, Peter F Dunfield, Manigee Derakshani, Stephan Stubner, Jürgen Heyer, Werner Liesack

Journal:

FEMS Microbiology Ecology

Year:

2003

Language:

english

File:

PDF, 370 KB

english, 2003

30

A reanalysis of phospholipid fatty acids as ecological biomarkers for methanotrophic bacteria

Bodelier, Paul L E, Bär Gillisen, Marie-José, Hordijk, Kees, Sinninghe Damsté, Jaap S, Rijpstra, W Irene C, Geenevasen, Jan A J, Dunfield, Peter F

Journal:

The ISME Journal

Year:

2009

Language:

english

File:

PDF, 218 KB

english, 2009

31

Cycling of extracellular DNA in the soil environment

David J. Levy-Booth, Rachel G. Campbell, Robert H. Gulden, Miranda M. Hart, Jeff R. Powell, John N. Klironomos, K. Peter Pauls, Clarence J. Swanton, Jack T. Trevors, Kari E. Dunfield

Journal:

Soil Biology and Biochemistry

Year:

2007

Language:

english

File:

PDF, 845 KB

english, 2007

32

An empirical approach to target DNA quantification in environmental samples using real-time polymerase chain reactions

Robert H. Gulden, David Levy-Booth, Rachel Campbell, Jeff R. Powell, Miranda M. Hart, Kari E. Dunfield, Jack T. Trevors, K. Peter Pauls, John N. Klironomos, Clarence J. Swanton

Journal:

Soil Biology and Biochemistry

Year:

2007

Language:

english

File:

PDF, 227 KB

english, 2007

33

Electing a candidate: a speculative history of the bacterial phylum OP10

Peter F. Dunfield, Ivica Tamas, Kevin C. Lee, Xochitl C. Morgan, Ian R. McDonald, Matthew B. Stott

Journal:

Environmental Microbiology

Year:

2012

Language:

english

File:

PDF, 260 KB

english, 2012

34

Methane production and consumption in temperate and subarctic peat soils: Response to temperature and pH

Peter Dunfield, Roger knowles, Rachel Dumont, Tim R. Moore

Journal:

Soil Biology and Biochemistry

Year:

1993

Language:

english

File:

PDF, 596 KB

english, 1993

35

Effect of glyphosate on the tripartite symbiosis formed by Glomus intraradices, Bradyrhizobium japonicum, and genetically modified soybean

Jeff R. Powell, Rachel G. Campbell, Kari E. Dunfield, Robert H. Gulden, Miranda M. Hart, David J. Levy-Booth, John N. Klironomos, K. Peter Pauls, Clarence J. Swanton, Jack T. Trevors, Pedro M. Antunes

Journal:

Applied Soil Ecology

Year:

2009

Language:

english

File:

PDF, 433 KB

english, 2009

36

Environmental, genomic and taxonomic perspectives on methanotrophic Verrucomicrobia

Huub J. M. Op den Camp, Tajul Islam, Matthew B. Stott, Harry R. Harhangi, Alexander Hynes, Stefan Schouten, Mike S. M. Jetten, Nils-Kåre Birkeland, Arjan Pol, Peter F. Dunfield

Journal:

Environmental Microbiology Reports

Year:

2009

Language:

english

File:

PDF, 445 KB

english, 2009

37

Encyclopedia of Life Sciences || Methanotrophy in Extreme Environments

Dunfield, Peter F

Year:

2001

Language:

english

File:

PDF, 252 KB

english, 2001

38

The (d)evolution of methanotrophy in the Beijerinckiaceae—a comparative genomics analysis

Tamas, Ivica, Smirnova, Angela V, He, Zhiguo, Dunfield, Peter F

Journal:

The ISME Journal

Year:

2014

Language:

english

File:

PDF, 669 KB

english, 2014

39

Distribution and diversity of V errucomicrobia methanotrophs in geothermal and acidic environments

Sharp, Christine E., Smirnova, Angela V., Graham, Jaime M., Stott, Matthew B., Khadka, Roshan, Moore, Tim R., Grasby, Stephen E., Strack, Maria, Dunfield, Peter F.

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 616 KB

english, 2014

40

Humboldt’s spa: microbial diversity is controlled by temperature in geothermal environments

Sharp, Christine E, Brady, Allyson L, Sharp, Glen H, Grasby, Stephen E, Stott, Matthew B, Dunfield, Peter F

Journal:

The ISME Journal

Year:

2014

Language:

english

File:

PDF, 1.08 MB

english, 2014

41

Influence of bioenergy cropJatropha curcasamendment on soil biogeochemistry in a tropical vertisol

Kollah, Bharati, Dubey, Garima, Dunfield, Peter, Mohanty, Santosh Ranjan

Journal:

Mitigation and Adaptation Strategies for Global Change

Year:

2015

Language:

english

File:

PDF, 393 KB

english, 2015

42

Genomic analysis of Chthonomonas calidirosea, the first sequenced isolate of the phylum Armatimonadetes

Lee, Kevin C-Y, Morgan, Xochitl C, Dunfield, Peter F, Tamas, Ivica, McDonald, Ian R, Stott, Matthew B

Journal:

The ISME Journal

Year:

2014

Language:

english

File:

PDF, 1.58 MB

english, 2014

43

Metagenomics of Hydrocarbon Resource Environments Indicates Aerobic Taxa and Genes to be Unexpectedly Common

An, Dongshan, Caffrey, Sean M., Soh, Jung, Agrawal, Akhil, Brown, Damon, Budwill, Karen, Dong, Xiaoli, Dunfield, Peter F., Foght, Julia, Gieg, Lisa M., Hallam, Steven J., Hanson, Niels W., He, Zhiguo,

Journal:

Environmental Science & Technology

Year:

2013

Language:

english

File:

PDF, 2.51 MB

english, 2013

44

Methanotrophic bacteria in warm geothermal spring sediments identified using stable-isotope probing

Sharp, Christine E., Martínez-Lorenzo, Azucena, Brady, Allyson L., Grasby, Stephen E., Dunfield, Peter F.

Journal:

FEMS Microbiology Ecology

Year:

2014

Language:

english

File:

PDF, 501 KB

english, 2014

45

The Paint Pots, Kootenay National Park, Canada — a natural acid spring analogue for Mars 1,2

Grasby, Stephen E., Richards, Barry C., Sharp, Christine E., Brady, Allyson L., Jones, Gareth M., Dunfield, Peter F., Williamson, Marie-Claude

Journal:

Canadian Journal of Earth Sciences

Year:

2013

File:

PDF, 1.20 MB

2013

46

Real-Time Polymerase Chain Reaction Monitoring of Recombinant DNA Entry into Soil from Decomposing Roundup Ready Leaf Biomass

Levy-Booth, David J., Campbell, Rachel G., Gulden, Robert H., Hart, Miranda M., Powell, Jeff R., Klironomos, John N., Pauls, K. Peter, Swanton, Clarence J., Trevors, Jack T., Dunfield, Kari E.

Journal:

Journal of Agricultural and Food Chemistry

Year:

2008

Language:

english

File:

PDF, 2.56 MB

english, 2008

47

Factors Affecting the Presence and Persistence of Plant DNA in the Soil Environment in Corn and Soybean Rotations

Robert H. Gulden, Sylvain Lerat, Robert E. Blackshaw, Jeff R. Powell, David J. Levy-Booth, Kari E. Dunfield, Jack T. Trevors, K. Peter Pauls, John N. Klironomos and Clarence J. Swanton

Journal:

Year:

2008

Language:

english

File:

PDF, 2.05 MB

english, 2008

48

Factors Affecting the Presence and Persistence of Plant DNA in the Soil Environment in Corn and Soybean Rotations

Gulden, Robert H., Lerat, Sylvain, Blackshaw, Robert E., Powell, Jeff R., Levy-Booth, David J., Dunfield, Kari E., Trevors, Jack T., Pauls, K Peter, Klironomos, John N., Swanton, Clarence J.

Journal:

Year:

2008

Language:

english

File:

PDF, 556 KB

english, 2008

49

Draft Genomes of Gammaproteobacterial Methanotrophs Isolated from Terrestrial Ecosystems: TABLE 1

Hamilton, Richard, Kits, K. Dimitri, Ramonovskaya, Victoria A., Rozova, Olga N., Yurimoto, Hiroya, Iguchi, Hiroyuki, Khmelenina, Valentina N., Sakai, Yasuyoshi, Dunfield, Peter F., Klotz, Martin G., K

Journal:

Genome Announcements

Year:

2015

Language:

english

File:

PDF, 176 KB

english, 2015

50

Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs

Eloe-Fadrosh, Emiley A., Paez-Espino, David, Jarett, Jessica, Dunfield, Peter F., Hedlund, Brian P., Dekas, Anne E., Grasby, Stephen E., Brady, Allyson L., Dong, Hailiang, Briggs, Brandon R., Li, Wen-

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 1.62 MB

english, 2016